Main
Océane Cassan
Currently searching for a Post-doctoral position
Education
University Claude Bernard
MSc in Computer Science specialized in Artificial Intelligence
Lyon, France
2019 - 2018
National Institute of Applied Sciences (INSA)
Engineering degree in Bioinformatics and Modelling
Lyon, France
2019 - 2014
Research Experience
PhD - BPMP, SIRENE team
Predictive biology and systems biology to learn the regulatory pathways in plants under climate change
Montpellier, France
2022 - 2019
- Statistical inference of the gene regulatory network in Arabidopsis thaliana under elevated CO2 and nutritional limitations from transcriptomic data
- Genome Wide Association study to identify genetic determinants of mineral status repsonse under elevated CO2
- Developement of an interactive suite for transcriptomic analyses and the inference of regulatory networks
- References : Antoine Martin and Sophie Lèbre
6 months research internship - LIRMM, MAB team
Supervised learning to predict chromosomic interactions in the human genome, based on CAGE data and 3C techniques
Montpellier, France
2019
- Reference : Laurent Bréhélin
1 month research internship - LIRMM, MAB team
Sparse logistic regression to model transcription factor combinatorics for gene regulation in human
Montpellier, France
2017
- Reference : Laurent Bréhélin
Professional Experience
Internship in quantitative biology - Nanolive SA
Development of software tools for the 3D detection and tracking of biological objects in label free images
Lausanne, Switzerland
2018
- Reference : Mathieu Frechin
Teaching Experience
Instructor of R for L3 plant biology students
University of Montpellier, France
2022 - 2021
- Good practices and scientific integrity around data analysis
- Data manipulation and visualisation in R
Instructor of Rmarkdown for M1 data science students
University Paul Valery of Montpellier, France
2022 - 2020
Regulatory network inference for M1 plant biology students
Statistical methods, and practical session
University of Montpellier, France
2022
Selected Publications and Posters
Inferring and Analyzing Gene Regulatory Networks from Multi-Factorial Expression Data: A Complete and Interactive Suite
Cassan, Océane, Sophie Lèbre, and Antoine Martin. 2021 BMC Genomics 22 (1). https://doi.org/10.1186/s12864‑021‑07659‑2
N/A
2021
Probing Transcription Factor Combinatorics in Different Promoter Classes and in Enhancers
Vandel, Jimmy, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, and Laurent Bréhélin. 2019 BMC Genomics 20 (1): 1–19. https://doi.org/10.1186/s12864-018-5408-0f
N/A
2019