Aside

Océane Cassan

Contact

Skills

Biology : plant biology, next generation sequencing data analysis

Computer science : R, ggplot2, tidyverse, R package developement, Rmarkdown, Shiny, Python, LaTeX, Bash

Disclaimer

Last updated on 2022-01-10.

Main

Océane Cassan

Currently searching for a Post-doctoral position

Education

University Claude Bernard

MSc in Computer Science specialized in Artificial Intelligence

Lyon, France

2019 - 2018

National Institute of Applied Sciences (INSA)

Engineering degree in Bioinformatics and Modelling

Lyon, France

2019 - 2014

Research Experience

PhD - BPMP, SIRENE team

Predictive biology and systems biology to learn the regulatory pathways in plants under climate change

Montpellier, France

2022 - 2019

  • Statistical inference of the gene regulatory network in Arabidopsis thaliana under elevated CO2 and nutritional limitations from transcriptomic data
  • Genome Wide Association study to identify genetic determinants of mineral status repsonse under elevated CO2
  • Developement of an interactive suite for transcriptomic analyses and the inference of regulatory networks
  • References : Antoine Martin and Sophie Lèbre

6 months research internship - LIRMM, MAB team

Supervised learning to predict chromosomic interactions in the human genome, based on CAGE data and 3C techniques

Montpellier, France

2019

  • Reference : Laurent Bréhélin

1 month research internship - LIRMM, MAB team

Sparse logistic regression to model transcription factor combinatorics for gene regulation in human

Montpellier, France

2017

  • Reference : Laurent Bréhélin

Professional Experience

Internship in quantitative biology - Nanolive SA

Development of software tools for the 3D detection and tracking of biological objects in label free images

Lausanne, Switzerland

2018

  • Reference : Mathieu Frechin

Teaching Experience

Instructor of R for L3 plant biology students

Teaching material

University of Montpellier, France

2022 - 2021

  • Good practices and scientific integrity around data analysis
  • Data manipulation and visualisation in R

Instructor of Rmarkdown for M1 data science students

Teaching material

University Paul Valery of Montpellier, France

2022 - 2020

Regulatory network inference for M1 plant biology students

Statistical methods, and practical session

University of Montpellier, France

2022

Selected Publications and Posters

Inferring and Analyzing Gene Regulatory Networks from Multi-Factorial Expression Data: A Complete and Interactive Suite

Cassan, Océane, Sophie Lèbre, and Antoine Martin. 2021 BMC Genomics 22 (1). https://doi.org/10.1186/s12864‑021‑07659‑2

N/A

2021

Probing Transcription Factor Combinatorics in Different Promoter Classes and in Enhancers

Vandel, Jimmy, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, and Laurent Bréhélin. 2019 BMC Genomics 20 (1): 1–19. https://doi.org/10.1186/s12864-018-5408-0f

N/A

2019